I've never had NY pizza and these recommendations may not be of much help since you're up in Noblesville, OP but Chicago's Pizza and Grecco's are pretty good. I know Grecco's is a local thing but I Chicago's has several stores around Indiana.
http://www.chicagospizzarestaurant.com
Chicago's "Skyline" deep-dish is epic crunchy browned cheese crust goodness!